{ "_id": "6a185bebacfb0bcc41dbb957", "Package": "SEMdeep", "Title": "Structural Equation Modeling with Deep Neural Network and\nMachine Learning Algorithms", "Version": "1.1.1", "Date": "2025-12-03", "Authors@R": "c(\nperson(\"Mario\", \"Grassi\", role=\"aut\", email=\"mario.grassi@unipv.it\"),\nperson(\"Barbara\", \"Tarantino\", role=\"cre\", email=\"barbara.tarantino01@universitadipavia.it\"))", "Description": "Training and validation of a custom (or data-driven)\nStructural Equation Models using Deep Neural Networks or\nMachine Learning algorithms, which extend the fitting\nprocedures of the 'SEMgraph' R package\n.", "URL": "https://github.com/BarbaraTarantino/SEMdeep", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Mario Grassi [aut], Barbara Tarantino [cre]", "Maintainer": "Barbara Tarantino\n", "Config/pak/sysreqs": "libglpk-dev make libicu-dev libpng-dev libxml2-dev\nlibssl-dev libnode-dev zlib1g-dev", "Repository": "https://barbaratarantino.r-universe.dev", "Date/Publication": "2025-12-18 16:37:21 UTC", "RemoteUrl": "https://github.com/barbaratarantino/semdeep", "RemoteRef": "HEAD", "RemoteSha": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "Packaged": { "Date": "2026-05-28 14:50:32 UTC", "User": "root" }, "MD5sum": "f96487fbbefda5c27204b7434a779428", "_user": "barbaratarantino", "_type": "src", "_file": "SEMdeep_1.1.1.tar.gz", "_fileid": "367a7b7a80eb152f1caef40605f42aa069a459826bf32af8006564f5cc4fdf1d", "_filesize": 285537, "_sha256": "367a7b7a80eb152f1caef40605f42aa069a459826bf32af8006564f5cc4fdf1d", "_created": "2026-05-28T14:50:32.000Z", "_published": "2026-05-28T15:14:51.559Z", "_distro": "noble", "_jobs": [ { "job": 78318511815, "time": 264, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7269246781" }, { "job": 78318512018, "time": 224, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7269236312" }, { "job": 78318511903, "time": 223, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7269707511" }, { "job": 78318511776, "time": 185, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7269689605" }, { "job": 78317312695, "time": 245, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7269108194" }, { "job": 78318511981, "time": 162, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7269209515" }, { "job": 78318511854, "time": 138, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7269197723" }, { "job": 78318511763, "time": 142, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7269199084" }, { "job": 78318511858, "time": 105, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7269184519" } ], "_buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/barbaratarantino/semdeep", "_commit": { "id": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "author": "grassiMario <93978837+grassiMario@users.noreply.github.com>", "committer": "GitHub ", "message": "Update README.md", "time": 1766075841 }, "_maintainer": { "name": "Barbara Tarantino", "email": "barbara.tarantino01@universitadipavia.it", "login": "barbaratarantino", "linkedin": "in/barbara-t", "description": "", "uuid": 62012637 }, "_registered": true, "_dependencies": [ { "package": "SEMgraph", "version": ">= 1.2.2", "role": "Depends" }, { "package": "igraph", "version": ">= 2.0.0", "role": "Depends" }, { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "coro", "role": "Imports" }, { "package": "corpcor", "role": "Imports" }, { "package": "kernelshap", "role": "Imports" }, { "package": "lavaan", "role": "Imports" }, { "package": "NeuralNetTools", "role": "Imports" }, { "package": "parabar", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "ranger", "role": "Imports" }, { "package": "rpart", "role": "Imports" }, { "package": "torch", "role": "Imports" }, { "package": "xgboost", "role": "Imports" } ], "_owner": "barbaratarantino", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-45", "n": 3 }, { "week": "2025-46", "n": 12 }, { "week": "2025-51", "n": 9 } ], "_tags": [], "_stars": 10, "_contributors": [ { "user": "grassimario", "count": 16, "uuid": 93978837 }, { "user": "barbaratarantino", "count": 12, "uuid": 62012637 } ], "_userbio": { "uuid": 62012637, "type": "user", "name": "Barbara Tarantino" }, "_downloads": { "count": 228, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SEMdeep" }, "_devurl": "https://github.com/barbaratarantino/semdeep", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SEMdeep.html", "manual.pdf" ], "_homeurl": "https://github.com/barbaratarantino/semdeep", "_realowner": "barbaratarantino", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2024-09-16" }, { "version": "1.0.0", "date": "2025-01-23" }, { "version": "1.1.0", "date": "2025-11-10" }, { "version": "1.1.1", "date": "2025-12-11" } ], "_exports": [ "classificationReport", "crossValidation", "getConnectionWeight", "getGradientWeight", "getLOCO", "getShapleyR2", "getSignificanceTest", "getVariableImportance", "mapGraph", "nplot", "predict.DNN", "predict.ML", "predict.SEM", "SEMdnn", "SEMml", "trainingReport" ], "_help": [ { "page": "classificationReport", "title": "Prediction evaluation report of a classification model", "topics": [ "classificationReport" ] }, { "page": "crossValidation", "title": "Cross-validation of linear SEM, ML or DNN training models", "topics": [ "crossValidation" ] }, { "page": "getConnectionWeight", "title": "Connection Weight method for neural network variable importance", "topics": [ "getConnectionWeight" ] }, { "page": "getGradientWeight", "title": "Gradient Weight method for neural network variable importance", "topics": [ "getGradientWeight" ] }, { "page": "getLOCO", "title": "Compute variable importance using LOCO values", "topics": [ "getLOCO" ] }, { "page": "getShapleyR2", "title": "Compute variable importance using Shapley (R2) values", "topics": [ "getShapleyR2" ] }, { "page": "getSignificanceTest", "title": "Test for the significance of neural network input nodes", "topics": [ "getSignificanceTest" ] }, { "page": "getVariableImportance", "title": "Variable importance for Machine Learning models", "topics": [ "getVariableImportance" ] }, { "page": "mapGraph", "title": "Map additional variables (nodes) to a graph object", "topics": [ "mapGraph" ] }, { "page": "nplot", "title": "Create a plot for a neural network model", "topics": [ "nplot" ] }, { "page": "predict.DNN", "title": "SEM-based out-of-sample prediction using DNN", "topics": [ "predict.DNN" ] }, { "page": "predict.ML", "title": "SEM-based out-of-sample prediction using nodewise ML", "topics": [ "predict.ML" ] }, { "page": "predict.SEM", "title": "SEM-based out-of-sample prediction using layer-wise ordering", "topics": [ "predict.SEM" ] }, { "page": "SEMdnn", "title": "SEM train with Deep Neural Netwok (DNN) models", "topics": [ "SEMdnn" ] }, { "page": "SEMml", "title": "Nodewise SEM train using Machine Learning (ML)", "topics": [ "SEMml" ] }, { "page": "trainingReport", "title": "Training history evaluation of a DNN model", "topics": [ "trainingReport" ] } ], "_readme": "https://github.com/barbaratarantino/semdeep/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "askpass", "aspect", "BH", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "bit", "bit64", "bitops", "blob", "boot", "cachem", "callr", "cherry", "class", "cli", "codetools", "coro", "corpcor", "cpp11", "crayon", "curl", "dagitty", "data.table", "DBI", "desc", "digest", "dir.expiry", "doFuture", "dplyr", "e1071", "farver", "fastmap", "filelock", "flip", "foreach", "future", "future.apply", "gdata", "generics", "ggm", "ggplot2", "glasso", "glmnet", "globals", "glue", "graph", "graphite", "gtable", "gtools", "hms", "hommel", "httr", "igraph", "IRanges", "isoband", "iterators", "jsonlite", "KEGGREST", "kernelshap", "labeling", "lattice", "lavaan", "lifecycle", "listenv", "lpSolve", "magrittr", "MASS", "Matrix", "memoise", "mgcv", "mime", "mnormt", "mvtnorm", "NeuralNetTools", "nlme", "nnet", "numDeriv", "openssl", "parabar", "parallelly", "pbapply", "pbivnorm", "pillar", "pkgconfig", "plyr", "png", "prettyunits", "processx", "progress", "protoclust", "proxy", "ps", "purrr", "quadprog", "R6", "ranger", "rappdirs", "RBGL", "RColorBrewer", "Rcpp", "RcppEigen", "reshape2", "Rgraphviz", "rlang", "rpart", "RSQLite", "S4Vectors", "S7", "safetensors", "scales", "SEMgraph", "Seqinfo", "shape", "someMTP", "stringi", "stringr", "survival", "sys", "tibble", "tidyr", "tidyselect", "torch", "utf8", "V8", "vctrs", "viridisLite", "withr", "xgboost", "XVector" ], "_score": 4.176091259055681, "_indexed": true, "_nocasepkg": "semdeep", "_universes": [ "barbaratarantino" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.1", "date": "2026-05-28T14:55:18.000Z", "distro": "noble", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "d828a2fe186c88a0f13f6333dbdec5dfc33dfa781385a28add669cfc76dc804e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.6.0", "os": "linux", "version": "1.1.1", "date": "2026-05-28T14:54:58.000Z", "distro": "noble", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "2e820a0a3cf499aff386082f5050031be8fbb6d66d6b41ad53cc2f1334e9a859", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.5.3", "os": "mac", "version": "1.1.1", "date": "2026-05-28T15:13:27.000Z", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "032befaa39697c389f2102872af6b02df3f76264c1a0b2e401aa8279eaed9554", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.6.0", "os": "mac", "version": "1.1.1", "date": "2026-05-28T15:12:45.000Z", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "4f76eefe59455edb5d1fbe240839841e54a961b6f2d212408ef09d0e54ebb805", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.1", "date": "2026-05-28T14:54:51.000Z", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "e6e6ab196d23726a9c3d322d02ad2dc11192686bc24596d8ec93343f2936f49e", "status": "success", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.7.0", "os": "win", "version": "1.1.1", "date": "2026-05-28T14:53:27.000Z", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "57cc6b97c1b14cf33a3ce40500b33237a17feb9105649bf77125a974d7100b7e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.5.3", "os": "win", "version": "1.1.1", "date": "2026-05-28T14:53:28.000Z", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "32bc4a019ffcc1ca5d8a1decbcf13752a9210e17e6393e2b3a9252f7ea83aadf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" }, { "r": "4.6.0", "os": "win", "version": "1.1.1", "date": "2026-05-28T14:53:16.000Z", "commit": "f344438cf11d6dfed83b43edd0d4f8f1254b3032", "fileid": "728edaa237e54290c5fd6f662aa419d8ee8557d1b2a60c886cfaf2af3c50754d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barbaratarantino/actions/runs/26581819778" } ] }